tests #495
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '*' | |
| pull_request: | |
| schedule: | |
| # Runs at 6:10am UTC on Monday | |
| - cron: '10 6 * * 1' | |
| jobs: | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/lint@v2 | |
| manifest: | |
| name: Check manifest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/check_manifest@v2 | |
| test: | |
| needs: [linting, manifest] | |
| name: ${{ matrix.os }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # Run across a mixture of Python versions and operating systems | |
| include: | |
| - os: ubuntu-latest | |
| python-version: "3.12" | |
| - os: macos-13 # just intel mac here, silicon mac tested with mamba due to niftyreg complications | |
| python-version: "3.11" | |
| - os: windows-latest | |
| python-version: "3.10" | |
| steps: | |
| - name: Cache brainglobe directory | |
| uses: actions/cache@v3 | |
| with: | |
| path: | # ensure we don't cache any interrupted atlas download and extraction, if e.g. we cancel the workflow manually | |
| ~/.brainglobe | |
| !~/.brainglobe/atlas.tar.gz | |
| key: atlases | |
| - name: Setup QT libraries | |
| uses: tlambert03/setup-qt-libs@v1 | |
| # Helps set up VTK with a headless display | |
| - uses: pyvista/setup-headless-display-action@v2 | |
| - name: Run tests | |
| uses: neuroinformatics-unit/actions/test@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| secret-codecov-token: ${{ secrets.CODECOV_TOKEN }} | |
| use-xvfb: true | |
| test-with-conda: | |
| # mainly checks conda installation of niftyreg, especially key on Silicon macs | |
| needs: [linting, manifest] | |
| name: Test conda-install, on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Setup mamba environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| init-shell: bash | |
| environment-name: niftyreg-env | |
| create-args: >- | |
| python=3.12 | |
| setuptools | |
| setuptools_scm | |
| wheel | |
| - name: Install package into environment | |
| shell: bash -el {0} | |
| run: | | |
| pip install .[dev] | |
| - name: Run backend tests (no conda binaries) | |
| shell: bash -el {0} | |
| run: | | |
| pytest -v tests/tests/test_backend | |
| - name: Install niftyreg with conda | |
| shell: bash -el {0} | |
| run: | | |
| micromamba install niftyreg | |
| - name: Run backend tests(conda binaries present) | |
| shell: bash -el {0} | |
| run: | | |
| pytest -v tests/tests/test_backend | |
| build_sdist_wheel: | |
| name: Build source distribution and wheel | |
| needs: [test, test-with-conda] | |
| if: github.event_name == 'push' && github.ref_type == 'tag' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2 | |
| deploy: | |
| name: Deploy to PyPI | |
| needs: [build_sdist_wheel] | |
| if: github.event_name == 'push' && github.ref_type == 'tag' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/upload_pypi@v2 | |
| with: | |
| secret-pypi-key: ${{ secrets.TWINE_API_KEY }} |