Graphing property-level dependencies in disease modules

[RachelMurray-Watson]

This PR creates two graphs: one shows the macro-level depedencies between disease modules, and one that shows which properties from one disease module are used in another.

• Will make module-by-module graphs of the property dependencies, for clarity

NOTE: In order to create a graph of the dependencies between disease modules, I need to ensure that all disease modules have declared their dependencies. I have gone through the disease modules manually and updated dependencies where I have noted they're missing, but I would appreciate it if module authors could double-check this and/or remove any modules that are no longer needed.

This was all done on cold reads of the model scripts.
In the future, could use the linear module function + runs of the module to map what exactly the properties are acting upon.

[tbhallett]

Hi @RachelMurray-Watson
Thanks very much for this. I really like these graphs.
I can see there is some little issue about the dependencies. I'll ask @matt-graham to review this.
I'm wondering whether it's possible to make the graphs without actually touching the modules in this PR (?), or whether the process of making these graphs has revealed some oversights in the declaration of dependencies that had previously gone unnoticed (?)

[RachelMurray-Watson]

Hi @RachelMurray-Watson Thanks very much for this. I really like these graphs. I can see there is some little issue about the dependencies. I'll ask @matt-graham to review this. I'm wondering whether it's possible to make the graphs without actually touching the modules in this PR (?), or whether the process of making these graphs has revealed some oversights in the declaration of dependencies that had previously gone unnoticed (?)

Yes! I actually meant to come back to this, but for the property-level graphs, I don't actually need to know the module dependencies at all, so I can remove that from this PR, and perhaps add it as an issue that not all modules declare all of their dependencies?

[tbhallett]

Yes! I actually meant to come back to this, but for the property-level graphs, I don't actually need to know the module dependencies at all, so I can remove that from this PR, and perhaps add it as an issue that not all modules declare all of their dependencies?

That would be perfect!

[RachelMurray-Watson]

Yes! I actually meant to come back to this, but for the property-level graphs, I don't actually need to know the module dependencies at all, so I can remove that from this PR, and perhaps add it as an issue that not all modules declare all of their dependencies?

That would be perfect!

Done!