mirsg.xnat Ansible Collection

This repository contains the mirsg.xnat Ansible Collection. This collection can be used for deploying XNAT in a dual-server setup.

Ansible is a free automation tool that can be used to configure servers without the need to install any agents or management servers.

You can run the Ansible playbooks on any machine that has the necessary dependencies installed. Ansible will use SSH to connect to the remote servers and perform the installation. Once deployed, the same playbooks can be used to modify or update the installation.

• The install_xnat playbook deploys a dual server XNAT setup. One server

• will run the XNAT web server, and the other will run the backend PostgreSQL database server.

• Optionally, a third server can be used to run the Container Service.

• The roles and playbooks in this repository are developed for and tested on servers running Centos 7. Other OS versions may require modifications to the playbooks, roles, and variables.

External requirements

Before using this collection and its playbooks, you must install the necessary Ansible collections and roles.

Using this collection

You can install this collection using the ansible-galaxy command-line tool:

ansible-galaxy collection install https://github.com/UCL-MIRSG/ansible-collection-xnat.git

You can also include it in a requirements.yml file and install it via ansible-galaxy collection install -r requirements.yml using the format:

collections:
  - name: mirsg.xnat
    source: https://github.com/UCL-MIRSG/ansible-collection-xnat.git
    type: git
    version: main

Testing this collection

We use Ansible Molecule and its Docker plugin to test this collection and its roles and playbooks.

If you would like to run the tests locally you will need to:

• clone this repository
• install Ansible Molecule and other test requirements
• run the tests using Molecule

Clone this repository

To test a collection, Molecule requires that it is in the path ansible_collections/<namespace>/<collection name>. This means when you clone this repository you must ensure it is in the path ansible_collections/mirsg/xnat. The simplest way to do this is:

git clone [email protected]:UCL-MIRSG/ansible-collection-xnat.git ansible_collections/mirsg/xnat

Install Ansible Molecule

Before running the tests you'll need to install Molecule, the Docker plugin, and the Python Docker Engine API using pip:

python -m pip install molecule 'molecule-plugins[docker]' docker

Run the tests using Molecule

Molecue 6.0 requires that the test configuration is not in the top-level directory of the collection. To support running the tests with Molecule 6, the Molecule configuration is in ansible_collections/mirsg/xnat/tests. To run the tests you must be in this directory:

cd ansible_collections/mirsg/xnat

This collection is tested using two different Molecule scenarios - one for CentOS 7 and one for Rocky 9.

To run the tests on CentOS 7:

molecule test -s centos7

This command will:

• install the required Ansible roles and collections
• create CentOS 7 containers for the web and database servers
• run the playbooks/install_xnat.yml playbook to deploy XNAT on these containers
• run playbooks/install_xnat.yml to check it is idempotent
• destroy the CentOS 7 containers

To run the tests on Rocky 9:

molecule test -s rocky9

Inspecting the Containers

If the XNAT deployment fails at any stage during the test, the containers are immediately destroyed. This is due to the pre-defined sequence of actions the Molecule take when the molecule test command is invoked.

If you would like to be able to access the containers or the XNAT web interface, you should instead use the molecule converge command. To deploy XNAT on CentOS 7:

molecule converge -s centos7

This will install necessary Ansible roles and collections, create the containers, and run the playbooks/install_xnat.yml playbook. If the deployment fails, the containers are not destroyed.

Access the containers

Once the command has finished running, you can access the containers using their names defined in the scenario. To access the web container:

docker exec -it xnat_web /bin/bash

And to access the database container:

docker exec -it xnat_db /bin/bash

Access the XNAT web interface

Once XNAT has been deployed on the containers, the XNAT web interface will be exposed on port 8080 of your localhost. To view the XNAT web interface go to http://localhost:8080/ in your web browser.

Destroy the containers

If you use the molecule converge command, you must remember to destroy the instances yourself:

molecule destroy -s centos7

Integration tests

When a PR that modifies any playbook or role is opened, the changes are tested by deploying XNAT using GitHub Actions. The integration tests will deploy XNAT on both CentOS 7 and Rocky 9.

An example deployment

The simplest way to deploy a test instance of XNAT is to use Ansible Molecule. Follow the above steps to install Molecule and deploy the test setup.

Architecture

See the architecture notes for a description of the components and services that are configured for the XNAT deployment.

Known issues

• The playbook will not remove existing IP ranges from the firewalls. If you remove an IP range from the configuration you also need to manually remove it on the servers.

Code style and formatting

This repo has pre-commit hooks enabled, for instructions see https://github.com/UCL-MIRSG/.github/tree/main/precommit.

License

This collection is licensed and distributed under the BSD 3-Clause License.

Author Information

This role was created by the Medical Imaging Research Software Group at UCL.