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@ShalekLab

ShalekLab

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  1. alexandria alexandria Public

    The Alexandria project aims to facilitate single-cell data analysis for users through providing an accessible data repository along with workflows, notebooks, and scripts

    Jupyter Notebook 9 3

  2. compressed_screening compressed_screening Public

    Code for the manuscript: Compressed phenotypic screening empowers scalable biological discovery.

    Jupyter Notebook 6 1

  3. kallisto-bustools_workflow kallisto-bustools_workflow Public

    WDL 2

  4. SARSCoV2-genome-reference SARSCoV2-genome-reference Public

    Edited SARS-CoV-2 genome fasta and gtf for Ziegler et al. 2021

    2

  5. Mead_et_al_NatBME_2021 Mead_et_al_NatBME_2021 Public

    Code and analyses for Mead et al Nature BME 2022

    R 2 1

  6. MIT_Milk_Study MIT_Milk_Study Public

    Jupyter Notebook 2

Repositories

Showing 10 of 19 repositories
  • MultiOmics_SeqWellS3 Public

    Workflow scripts for data analyses of multi-omics data generated using Seq-Well S3

    ShalekLab/MultiOmics_SeqWellS3’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Dec 2, 2024
  • KEMRI_Kilifi_2024_workshop Public
    ShalekLab/KEMRI_Kilifi_2024_workshop’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Sep 24, 2024
  • MISTI_Bogota_2024_workshop Public
    ShalekLab/MISTI_Bogota_2024_workshop’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 5, 2024
  • HCA_Thailand_2024_workshop Public Forked from davidsebfischer/scRNAseq_workshop

    Computational workshop material for the HCA thailand training lives here

    ShalekLab/HCA_Thailand_2024_workshop’s past year of commit activity
    Jupyter Notebook 2 5 0 0 Updated Jul 12, 2024
  • compressed_screening Public

    Code for the manuscript: Compressed phenotypic screening empowers scalable biological discovery.

    ShalekLab/compressed_screening’s past year of commit activity
    Jupyter Notebook 6 1 0 0 Updated Apr 17, 2024
  • mTB_CD8_Depletion Public
    ShalekLab/mTB_CD8_Depletion’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Sep 28, 2023
  • Mead_et_al_NatBME_2021 Public

    Code and analyses for Mead et al Nature BME 2022

    ShalekLab/Mead_et_al_NatBME_2021’s past year of commit activity
    R 2 MIT 1 0 0 Updated May 23, 2022
  • MIT_Milk_Study Public
    ShalekLab/MIT_Milk_Study’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 10, 2022
  • tcrgo Public

    Identification and quantification of Seq-Well TCR transcripts and their recovered CDR3 sequences.

    ShalekLab/tcrgo’s past year of commit activity
    Python 1 2 5 0 Updated Oct 13, 2021
  • alexandria Public

    The Alexandria project aims to facilitate single-cell data analysis for users through providing an accessible data repository along with workflows, notebooks, and scripts

    ShalekLab/alexandria’s past year of commit activity
    Jupyter Notebook 9 3 1 (1 issue needs help) 1 Updated Aug 24, 2021
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