Version 0.0.8

bump (#27)

* points to brainrender

* update testing

* refactor

* refactor

* badges

* notes

* initial inj finder commit (#11)

* formatting with black

* add .DS_store to gitignore

* typo

* update imports

* update imports

* deal with no obj path given

* error typo

* move utils too imlib

* remove amap imports

* optional logging to file

* tidy

* registration moved to imlib

* keep largest object

* reduce RAM usage

* remove unnecessary logging args

* adds lesion and track estimation and generic tools

* add missing dir support for cell export

* add missing dir support for cell export

* reduce mem requirements

* remove old code

* remove old code

* refactor scaling

* fix failing heatmap test

* update docs

* ensure output directory exists

* make pixel sizes mandatory

* make pixel sizes mandatory (#17)

* move functionality to imlib

* remove hard coded smoothing

* Refactor (#19)

* make pixel sizes mandatory

* move functionality to imlib

* remove hard coded smoothing

* update docs

* Injectionsite (#20)

* refactors code from SL to import from neuro and imlib only

* moves amap_vis to neuro and removes amap and cellfinder dependencies;

* format with black

* amap_vis

* bump

* remove cellfinder dependency

* cli entry point for fibre track segmentation

* refactor seg tools

* start manual seg

* remove hardocoding in manual region segmentation

* refactor paths

* bump

* update docs

* update docs

* update docs

* update docs

* support multiple objects

* color objects

* bump

* update reqs

* improve rendering of flat objects

* bump

* prevent saving unnecessary common volume

* allow ROIs to be edited

* label regions

* bump

* bump

Co-authored-by: Federico Claudi <[email protected]>
Co-authored-by: stephen <[email protected]>

Version 0.0.7

Refactor imports (#21)

* points to brainrender

* update testing

* refactor

* refactor

* badges

* notes

* initial inj finder commit (#11)

* formatting with black

* add .DS_store to gitignore

* typo

* update imports

* update imports

* deal with no obj path given

* error typo

* move utils too imlib

* remove amap imports

* optional logging to file

* tidy

* registration moved to imlib

* keep largest object

* reduce RAM usage

* remove unnecessary logging args

* adds lesion and track estimation and generic tools

* add missing dir support for cell export

* add missing dir support for cell export

* reduce mem requirements

* remove old code

* remove old code

* refactor scaling

* fix failing heatmap test

* update docs

* ensure output directory exists

* make pixel sizes mandatory

* make pixel sizes mandatory (#17)

* move functionality to imlib

* remove hard coded smoothing

* Refactor (#19)

* make pixel sizes mandatory

* move functionality to imlib

* remove hard coded smoothing

* update docs

* Injectionsite (#20)

* refactors code from SL to import from neuro and imlib only

* moves amap_vis to neuro and removes amap and cellfinder dependencies;

* format with black

* amap_vis

Co-authored-by: Federico Claudi <[email protected]>
Co-authored-by: stephen <[email protected]>

v0.0.6

Update imlib api usage (#7)

v0.0.5

Add heatmap (#6)

* update imlib api call

* add heatmap

* heatmap test

v0.0.4

Contributing

v0.0.3

Release v0.0.3