Use source activate rather than conda activate in hpc

SainsburyWellcomeCentre · Oct 29, 2024 · 16f6470 · 16f6470
1 parent 5d58d85
commit 16f6470
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diff --git a/bash_scripts/run_training_array.sh b/bash_scripts/run_training_array.sh
@@ -82,7 +82,8 @@ conda create \
     python=3.10
 
 # activate environment
-conda activate $ENV_PREFIX
+# conda activate $ENV_PREFIX
+source activate $ENV_PREFIX
 
 # install crabs package in virtual env
 python -m pip install git+https://github.com/SainsburyWellcomeCentre/crabs-exploration.git@$GIT_BRANCH

diff --git a/bash_scripts/run_training_single.sh b/bash_scripts/run_training_single.sh
@@ -67,7 +67,9 @@ conda create \
     python=3.10
 
 # activate environment
-conda activate $ENV_PREFIX
+# conda activate $ENV_PREFIX
+source activate $ENV_PREFIX
+
 
 # install crabs package in virtual env
 python -m pip install git+https://github.com/SainsburyWellcomeCentre/crabs-exploration.git@$GIT_BRANCH