Merge pull request #322 from JaerongA/datajoint_pipeline

feat: ✨ add a cronjob script for dj workers

docker/cron_script.bash

@@ -0,0 +1,47 @@
+#!/bin/bash
+
+# This script will be run every 4 hours in a cron job.
+# Open up a crontab ('crontab -e') and add the following:
+# 0 */4 * * * /path/to/cron_script.bash 
+# For debugging, run ./cron_script.bash -v
+
+verbose=0
+
+while [[ "$#" -gt 0 ]]; do
+    case $1 in
+        -v|--verbose) verbose=1 ;;
+    esac
+    shift
+done
+
+# Verbose option for debugging
+print_verbose() {
+    if [ "$verbose" -eq 1 ]; then
+        printf "[DEBUG] %s - %s\n\n" "$1" "$(date '+%Y-%m-%d %H:%M:%S')"
+    fi
+}
+
+print_verbose "Starting Ingestion..."
+cd /nfs/nhome/live/aeon_db/aeon_mecha/docker/
+
+if docker image inspect ghcr.io/sainsburywellcomecentre/aeon_mecha > /dev/null 2>&1; then
+    print_verbose "Removing existing aeon_mecha image..."
+    docker image rm ghcr.io/sainsburywellcomecentre/aeon_mecha
+fi
+
+print_verbose "Terminate worker containers..."
+docker-compose down
+if [ $? -eq 0 ]; then
+    print_verbose "Workers terminated successfully."
+else
+    print_verbose "Failed to terminate workers."
+fi
+
+print_verbose "Restart containers..."
+docker-compose up --detach
+if [ $? -eq 0 ]; then
+    print_verbose "Containers restarted successfully."
+else
+    print_verbose "Failed to restart containers."
+fi
+