Add reference to glossary terms (#18)

src/reference/glossary.md

@@ -2,31 +2,35 @@
 
 This glossary provides definitions for terms used throughout the project documentation.
 
+:::{glossary}
+
 Aeon
-: The source of all being [^1]
+    The source of all being. [^1]
 
 Session
-: For experiment 0.1, the event over the time period when an animal is placed in the nesting cage until the time the animal is removed from the nesting cage.
+    For experiment 0.1, the event over the time period when an animal is placed in the nesting cage until the time the animal is removed from the nesting cage.
 
 Trial
-: For experiment 0.1, the event over the time period when an animal starts moving the wheel on a patch until the time a pellet is delivered. Every experiment 0.1 session ends on incompleted trials.
+    For experiment 0.1, the event over the time period when an animal starts moving the wheel on a patch until the time a pellet is delivered. Every experiment 0.1 {term}`session` ends on incompleted trials.
 
 Acquisition Epoch
-: The event over the time period when the acquistion computer is on and acquiring data until it is stopped. For experiment 0.1 there are multiple acquisition runs due to Bonsai/Windows being restarted.
+    The event over the time period when the acquistion computer is on and acquiring data until it is stopped. For experiment 0.1 there are multiple acquisition runs due to Bonsai/Windows being restarted.
 
 Acquisition Chunk Duration
-: The time duration over which datastream files are written out. For experiment 0.1, datastreams were written out in files of 1 hour chunk durations.
+    The time duration over which datastream files are written out. For experiment 0.1, datastreams were written out in files of 1 hour chunk durations.
 
 Acquisition Chunk
-: The event (i.e. all data) over a particular acquisition chunk duration.
+    The event (i.e. all data) over a particular {term}`acquisition chunk duration`.
 
 Acquisition Slice Duration
-: The minimum time resolution a user can get from an initial query of a Datajoint table (the timebin size of BLOB and QC data stored in Datajoint tables). For experiment 0.1 this was 10 minutes.
+    The minimum time resolution a user can get from an initial query of a Datajoint table (the timebin size of BLOB and QC data stored in Datajoint tables). For experiment 0.1 this was 10 minutes.
 
 Acquisition Slice
-: The event (i.e. all data) over a particular acquisition slice duration.
+    The event (i.e. all data) over a particular {term}`acquisition slice duration`.
 
 Task Protocol
-: An integer number and associated string describing a unique behavioral task run in Project Aeon. For experiment 0.1, there were 8 unique behavioral tasks run.
+    An integer number and associated string describing a unique behavioral task run in Project Aeon. For experiment 0.1, there were 8 unique behavioral tasks run.
+
+:::
 
 [^1]: https://en.wikipedia.org/wiki/Aeon_(Gnosticism)