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Add export tsv#67

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sfmig wants to merge 15 commits intomainSainsburyWellcomeCentre/WAZP:mainfrom add-export-csvSainsburyWellcomeCentre/WAZP:add-export-csvCopy head branch name to clipboard

+449-141

Commits

Commits on Mar 20, 2023

• restructure dataframe from DLC and add events column. rename references to pose_estimation_model_str to model_str.

  sfmig

  committed
  753c99a

• Move addition of video file column outside DLC df restructuring. Extract subset of frames just after DLC df reformatting. Add options for reading a multianimal DLC dataframe.

  sfmig

  committed
  b0b7e34

• updated mypy in precommits

  sfmig

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  169b9fa

• fix some mypy errors but still ignoring some types

  sfmig

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  cbada66

• added comments

  sfmig

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  646fdd3

• add ROI to dataframe

  sfmig

  committed
  5c10e2a

Commits on Mar 21, 2023

• add shapely to pyproject

  sfmig

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  adfb3b2

• rename roi_names for ROI_tags

  sfmig

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  0767ee8

• reorder fields in sample metadata file with ROIs

  sfmig

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  9610ff0

• insert video_file column after model_str

  sfmig

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  ff5fbd2

• put ROI assignment in a separate function. add option for defining a custom hierarchy of ROIs.

  sfmig

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  8469978

• add custom ROI hierarchy option in project config

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  5650363

• add option for buffer around the ROIs boundaries (not mandatory)

  sfmig

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  8875f1d

• minor additions to docstring

  sfmig

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  aa818a8

Commits on Mar 22, 2023

• add checklist with export options (default h5). add warning if no export option selected. print paths for exported files in new lines.

  sfmig

  committed
  e48825c