specify upper bound for snakemake version for support of subworkflows #58
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Thanks @rgutzen for taking care of this! |
mdenker
approved these changes
Feb 8, 2024
cosimolupo
approved these changes
Feb 13, 2024
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snakemake >= 8.0.0 introduces breaking changes, including dropping support for the deprecated 'subworkflow' feature which is used in cobrawap. Ultimately, we must adopt the suggested alternative "module" feature to realize the same functionality. See issue #57. For now, this PR limits the snakemake version to < 8.0.0, so that it still works with the corresponding dependencies when installed via pip.