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@NeLy-EPFL

Neuroengineering Laboratory @ EPFL - Ramdya Lab

We are reverse-engineering the fly, Drosophila melanogaster, to understand how animals generate flexible motor behaviors, leverage social information, and learn about the world. We believe that our efforts will uncover general insights into biological intelligence and can inform the design of better artificial systems and robots.

Flies are ideal for this goal: they generate complex behaviors yet have a small nervous system and are genetically malleable. For our research, we develop and use a variety of approaches including microscopy, machine learning, genetics, and computational modeling. We are part of the Brain Mind Institute and Institute of Bioengineering in the School of Life Sciences at EPFL, Switzerland 🇨🇭.

Some of our recent science and new technologies

For further information, see our Publications page.

Popular repositories Loading

  1. DeepFly3D DeepFly3D Public

    Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

    Jupyter Notebook 88 17

  2. NeuroMechFly NeuroMechFly Public archive

    A neuromechanical model of adult Drosophila melanogaster.

    Python 44 1

  3. LiftPose3D LiftPose3D Public

    Python 33 4

  4. flygym flygym Public

    Simulating embodied sensorimotor control with NeuroMechFly v2

    Python 25 6

  5. sequential-inverse-kinematics sequential-inverse-kinematics Public

    Sequential inverse kinematics pipeline.

    Python 3

  6. Imaging-Drosophila-VNC-and-CC Imaging-Drosophila-VNC-and-CC Public

    Code used for the paper "Imaging neural activity in the ventral nerve cord and cervical connective of behaving adult Drosophila" by Chen, Hermans, et al. 2018

    Python 2 3

Repositories

Showing 10 of 54 repositories
  • flygym Public

    Simulating embodied sensorimotor control with NeuroMechFly v2

    NeLy-EPFL/flygym’s past year of commit activity
    Python 25 Apache-2.0 6 5 0 Updated Oct 31, 2024
  • DeMotion5D Public

    Remove sample movement from 5D microscopy data (xyz+time+color)

    NeLy-EPFL/DeMotion5D’s past year of commit activity
    Python 0 0 0 0 Updated Oct 31, 2024
  • utils_behavior Public

    Utility functions to manipulate and analyze behavior videos and associated data (tracking...) acquired in various setups and settings.

    NeLy-EPFL/utils_behavior’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 31, 2024
  • vnc_networks Public

    Code to analyse the MANC connectome and perform connectome-constrained modelling

    NeLy-EPFL/vnc_networks’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 30, 2024
  • sleap_tools Public

    A repository to regroup useful code to manipulate sleap objects and h5 exports, as well as help and method to setup tracking routines.

    NeLy-EPFL/sleap_tools’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 29, 2024
  • Tracking_Analysis Public

    This repository comprises a set of tools used to perform tracking on behaviour arena data, analysis and plotting.

    NeLy-EPFL/Tracking_Analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Oct 29, 2024
  • DeepFly3D Public

    Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

    NeLy-EPFL/DeepFly3D’s past year of commit activity
    Jupyter Notebook 88 LGPL-3.0 17 2 0 Updated Oct 28, 2024
  • NeLy-EPFL/PyBundleAdjustment’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 28, 2024
  • NeLy-EPFL/DeepFly2D’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 28, 2024
  • dn_networks Public

    Repository holding the code for Braun et al. 2023

    NeLy-EPFL/dn_networks’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 23, 2024

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