This is a Galaxy wrapper for the mzml2isa python package tool.
- Full documentation: http://2isa.readthedocs.io/en/latest/
- Python PyPi package: https://pypi.python.org/pypi/mzml2isa/
- Github code: https://github.com/ISA-tools/mzml2isa
mzml2isa is a program that allows you to convert metabolomic studies in .mzML format to the open ISA-Tab standard supported by the MetaboLights database.
The recommended installation is by means of the toolshed (https://toolshed.g2.bx.psu.edu/). Dependencies should be installed automatically when using Galaxy version >= 16.10.
The dependencies are dealt with Bioconda. To ensure that Bioconda is working check to make sure the following settings are in the config/galaxy.ini file.
# dependencies before each job runs.
conda_auto_install = True
# Set to True to instruct Galaxy to install Conda from the web automatically
# if it cannot find a local copy and conda_exec is not configured.
conda_auto_init = True
GNU General Public License v3 (GPLv3)
v1.1.1+galaxy1
- Fix dependency issues - specifically required "zip"
v1.1.1+galaxy0
- Version bump to mzml2isa 1.1.1
- Galaxy tool python3 compatible (#10)
- Removed functionality to add additional usermeta data for ISA directly via individual Galaxy Tool inputs (deemed unpractical - and is suited for a separate tool). A JSON file can still be used for this functionality
- Highlight tar option more clearly (#5)
- Bug fixed for json handling (#6)
- CI/CD updates
v0.1.0
- For mzml2isa v0.4.24 (For Galaxy-python2 only)