Cell segregation (Cellpose) from the 3D image of the zebrafish habenula. Localise the RNA signals (skimage.feature.blob_log) in the cells and identify co-localisation of two different RNA signals (tac3a and vglut1). Merge the segregation & RNA blob data and produce visualised result (napari view & 3D animation) to illustrate the localisation of RNA signal
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Cell segregation (Cellpose) from the 3D image of the zebrafish habenula. Localise the RNA signals (skimage.feature.blob_log) in the cells and identify co-localisation of two different RNA signals (tac3a and vglut1). Merge the segregation & RNA blob data and produce visualised result (napari view & 3D animation) to illustrate the localisation of RNA
HaoyuLi00/HCR-signal-localisation
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Cell segregation (Cellpose) from the 3D image of the zebrafish habenula. Localise the RNA signals (skimage.feature.blob_log) in the cells and identify co-localisation of two different RNA signals (tac3a and vglut1). Merge the segregation & RNA blob data and produce visualised result (napari view & 3D animation) to illustrate the localisation of RNA
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