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47 Open 1,050 Closed
47 Open 1,050 Closed
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Issues list

How to filter the annotated result for each variant?
#1782 opened Nov 1, 2024 by Xi-Cao
@dglemos
5
VEP can't handle gzipped vcf as input
#1781 opened Oct 30, 2024 by Lloyd-LiuSiyi
@dglemos
7
Multiple CSQ fields when re-annotating a VCF with --keep_csq
#1780 opened Oct 29, 2024 by TimD1
@dglemos
1
ONE-BASED REFERENCE
#1779 opened Oct 25, 2024 by vappiah
@likhitha-surapaneni
1
MSG: The coordinate interval for display is of different length than for the reference allele
#1775 opened Oct 22, 2024 by suzyhh
@likhitha-surapaneni
6
Missing annotations for BND variants.
#1774 opened Oct 22, 2024 by ramprasadn
@likhitha-surapaneni
2
checksum for <genome> doesn't match checksum in CHECKSUMS file on FTP site
#1771 opened Oct 18, 2024 by amizeranschi
@likhitha-surapaneni
2
Optimize WGS VCF File Annotation for Improved Performance and Speed
#1769 opened Oct 18, 2024 by Ananya-swi
@jamie-m-a
7
How can I use my own fasta and gff to annotate?
#1768 opened Oct 15, 2024 by DayTimeMouse
@jamie-m-a
1
MSG: ERROR: No such operator "D"
#1767 opened Oct 11, 2024 by BenjaminDEMAILLE
@jamie-m-a
1
Error division by zero bug parser
#1765 opened Oct 9, 2024 by xsoleacha
@nakib103
2
substr outside of string in VariationEffect.pm line 1329
#1764 opened Oct 9, 2024 by bartgrantham
@dglemos
5
Can't use filter_vep subfields in the tab separated vep output file
#1761 opened Sep 30, 2024 by tamil-acog
@nakib103
2
Inconsistent HGNC:ID results between single-thread and multi-thread in vep
#1759 opened Sep 26, 2024 by karlestira
@likhitha-surapaneni
4
Can not find .index file for FASTA file bug
#1755 opened Sep 18, 2024 by kuaileshizuihao
@likhitha-surapaneni
4
gnomADe annotation not presented for a variant
#1754 opened Sep 13, 2024 by Aisha-D
@dglemos
4
High memory usage due to 368 BRCA1 RefSeq transcripts - Transcript blocklist / allowlists or option for max transcripts enhancement
#1732 opened Aug 1, 2024 by davmlaw
@nakib103
3
VEP112 predicts "inframe_insertion, stop_retained_variant" in cases where previously was predicted as "frameshift_variant, stop_gained"
#1710 opened Jun 27, 2024 by jperales
@olaaustine
8
From which COSMIC donwlodad file do the "Existing_variation" come?
#1691 opened Jun 5, 2024 by MGCarta
@jamie-m-a
3
Allow passing a github token to avoid rate limit errors enhancement
#1687 opened May 31, 2024 by dvg-p4
@likhitha-surapaneni
1
Performance and Error Issues with VEP v111 Docker Container bug docker/singularity
#1681 opened May 23, 2024 by Ananya-swi
@nakib103
4
Differing ClinVar clinical significance annotation according to transcript/feature bug
#1680 opened May 23, 2024 by growland2
@jamie-m-a
2
Alternative allele of matched variants is not reported in custom annotation with overlap method
#1664 opened Apr 24, 2024 by jperales
@likhitha-surapaneni
1
Using one of the two annotation sources VCF is used when same annotation source name is used
#1651 opened Apr 5, 2024 by Aisha-D
@dglemos
5
Feature Requests for custom VCF to be able to retrieve both ID and coords (to replace StructuralVariantOverlap) custom annotation enhancement
#1645 opened Mar 25, 2024 by davmlaw
@nakib103
2
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