pyproject.toml

[project]
name = "bg-atlasgen"
description = "Scripts generation atlases and utilities for BrainGlobe"
readme = "README.md"
license = {file = "LICENSE"}
authors = [
    {name = "Luigi Petrucco, Federico Claudi, Adam Tyson", email = "code@adamltyson.com"},
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
]
requires-python = ">=3.8"
dependencies = [
    "PyMCubes",
    "SimpleITK",
    "bg_atlasapi",
    "imio",
    "loguru",
    "meshio",
    "numpy",
    "pandas",
    "requests",
    "rich",
    "tifffile",
    "tqdm>=4.46.1",
    "treelib",
    "vedo",
    "xmltodict",
]
dynamic = ["version"]

[project.urls]
Homepage = "https://github.com/brainglobe/bg-atlasgen"

[project.optional-dependencies]
allenmouse = [
    "allensdk",
]

dev = [
  "pytest",
  "pytest-cov",
  "pytest-mock",
  "coverage",
  "tox",
  "black",
  "mypy",
  "pre-commit",
  "ruff",
  "setuptools_scm",
]

[build-system]
requires = [
    "setuptools>=45",
    "wheel",
    "setuptools_scm[toml]>=6.2",
]
build-backend = "setuptools.build_meta"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
include = ["bg_atlasgen*"]


[tool.black]
target-version = ['py38', 'py39', 'py310', 'py311']
skip-string-normalization = false
line-length = 79

[tool.setuptools_scm]

[tool.check-manifest]
ignore = [
  "*.yaml",
  "tox.ini",
  "tests/*",
  "tests/test_unit/*",
  "tests/test_integration/*",
]

[tool.ruff]
line-length = 79
exclude = ["__init__.py","build",".eggs"]
select = ["I", "E", "F"]
# E501 Line too long
ignore = ["E501"]
fix = true