#Running ##Environment
- add script folder to your PATH by:
- type, from this folder, every time you open a new terminal
source enable.sh
- add (only once) cnidaria/scripts to your $HOME/.bashrc and restart (only once) your terminal
echo "export PATH=$PWD/scripts:$PATH" >> $HOME/.bashrc
echo "export PATH=$PWD/src/libs/Jellyfish/bin/:$PATH" >> $HOME/.bashrc
#Test enter the test folder
cd test
download the necessary fastas
./unpack.sh
run make
make
the output can be found in out/test/test