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INSTALL.md

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#Summary: Cnidaria comes pre-compiled. No installation or compilation required.

#Running ##Environment

  • add script folder to your PATH by:
    • type, from this folder, every time you open a new terminal
source enable.sh
- add (only once) cnidaria/scripts to your $HOME/.bashrc and restart (only once) your terminal
echo "export PATH=$PWD/scripts:$PATH" >> $HOME/.bashrc
echo "export PATH=$PWD/src/libs/Jellyfish/bin/:$PATH" >> $HOME/.bashrc

Compiling (!Not necessary!)

NOT NECESSARY NOT NECESSARY NOT NECESSARY NOT NECESSARY NOT NECESSARY NOT NECESSARY NOT NECESSARY NOT NECESSARY NOT NECESSARY

If you still want to do so:

##To recompile on Ubuntu 12:

bash INSTALL.md.4.system_compile_requirements_ubuntu_12.04
bash INSTALL.md.1.compile

##To recompile on Ubuntu 14:

bash INSTALL.md.3.system_compile_requirements
bash INSTALL.md.4.compile

then:

bash INSTALL.md.2.python_system_requirements
bash INSTALL.md.3.python_requirements_globally
echo "export PATH=$PWD/scripts:$PATH" >> $HOME/.bashrc
export PATH=$PWD/scripts:$PATH
cnidaria.py -h