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Running Precogx locally #97

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charlieccp opened this issue Jan 17, 2024 · 1 comment
Open

Running Precogx locally #97

charlieccp opened this issue Jan 17, 2024 · 1 comment

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@charlieccp
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Hello,

I'm running Precogx locally and I was wondering if it's possible to know, like on the webserver, the residues that are in contact with the Gprotein for a particular GPCR and a particular Gprotein?

Moreover, if I may allow myself, I would like to share with you that I had to remove all "header.split('>')[1]" and "header[1:]" into just "header" in both the predict.py and precogx.py code to be able to run the code successfully (I had inputted a regular fasta file with 1 sequence). Otherwise I would receive error like
"File "/Users/charlottecrauwels/precogx/./static/predictor/precogx.py", line 239, in main
if header.split('>')[1]:
IndexError: list index out of range"
It's maybe worth looking into it for further users?

Anyways, thank you for your time and work, I think the predictor is great!

Best,
Charlotte

@charlieccp
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Mmm nevermind the comment about the headers, it seems to be depending on which machine you are running it, locally that modificaiton was needed but on our server not... Weirdly enough...

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