Run PRECOGx on all GPCRs and store info in SQL DB

[gurdeep330]

Hi Gurdeep,

yes, I think that 25 sequences is already pretty generous .... we should
also provide a refreshing page with the URL of the output, and possibly the
option to provide an email, in case the calculations will take a while.
We should probably also run the prediction for all the GPCR sequences at
least of the human GPCRome (and possibly from swissprot) and store this
information in a database (SQLite or MySQL), so to speed up the analysis
in those cases where a certain sequence was already analyzed or for the
mutation analysis case (the WT embeddings predictions should already be
there).

Talk to you on Thursday.
Best,
Francesco

On Tue, Dec 7, 2021 at 11:52 AM Gurdeep Singh @.***>
wrote:

Hi everybody @raimondifranc https://github.com/raimondifranc
@nataliarosa9 https://github.com/nataliarosa9 @maticmarin
https://github.com/maticmarin

I remember that @nataliarosa9 https://github.com/nataliarosa9 had shown
us in the previous call input checks that she created (eg: only alphabets
in FASTA etc). So here I am making a list of other checks that we have to
make in the input.

We all can edit (add more items) this checkbox-list and request
@nataliarosa9 https://github.com/nataliarosa9 to include them also:

• Input accepted only in FASTA formatted or precog format (eg:
  DRD1/F61P)
• If the input is FASTA, it cannot be more than 1024 residues long
  (correct @maticmarin https://github.com/maticmarin?)
• Use cannot input more than 25 sequences in one go (counting both WT
  and MUT), right, @raimondifranc https://github.com/raimondifranc?

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Originally posted by @raimondifranc in #14 (comment)