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Hi Matt, I am facing an issue with the model for EWAS analysis. I would be grateful if you could please suggest the following:
grp <- grp[match(colnames(Mval1), rownames(grp)), , drop=FALSE] > stopifnot(identical(rownames(grp), colnames(Mval1))) > isv <- isv[match(colnames(Mval1), rownames(isv)), , drop=FALSE] > stopifnot(identical(rownames(isv), colnames(Mval1))) > ewas.ret <- meffil.ewas(Mval1, variable=grp, covariates=isv, isva=F) Error in meffil.ewas(Mval1, variable = grp, covariates = isv, isva = T) : length(all.samples) == length(variable) is not TRUE > dim(grp) [1] 52 1 > dim(isv) [1] 52 13 > dim(Mval1) [1] 898469 52 > class(grp) [1] "data.frame" > class(isv) [1] "data.frame" > summary(grp) grp M: 8 O:22 Y:22
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Hi Matt,
I am facing an issue with the model for EWAS analysis. I would be grateful if you could please suggest the following:
The text was updated successfully, but these errors were encountered: