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@ICR-analysis ICR Image Analysis

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    18 repositories

    • .github

      Public
      0•0•0•0•Updated May 3, 2024May 3, 2024

    • ICR-analysis.github.io

      Public
      HTML
      •0•0•0•0•Updated Nov 10, 2021Nov 10, 2021

    • foci-timelapse

      Public
      Measure foci dynamics
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • CalciumAnalysis

      Public
      Simple analysis of calcium dynamics in 2D images.
      MATLAB
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • foci-colocalisation

      Public
      Measure colocalisation of two types of foci per cell.
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • cell-coloc-3D

      Public
      Measure distribution of a marker per cell, per object (manually segmented)
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • foci2D

      Public
      Assess foci in 2D images on a per cell basis (using nuclear marker)
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • relativeTrack

      Public
      Track one class of objects relative to another.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • coloc-3DT

      Public
      Measure intensity of one marker in another.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated May 22, 2019May 22, 2019

    • snakemake-workflows

      Public
      snakemake workflows produced, tested and used at MPI CBG
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•0•Updated Oct 29, 2018Oct 29, 2018

    • intro-image-analysis

      Public
      ICR Image Analysis Course
      CSS
      •1•0•0•0•Updated Oct 16, 2018Oct 16, 2018

    • misc

      Public
      0•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • cellprofiler

      Public
      Cellprofiler pipelines
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • Python_tools

      Public
      General python image processing
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • FIJI_ICR

      Public
      Assorted FIJI macros and scripts
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • MATLAB_tools

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 1, 2018Aug 1, 2018

    • man-seg-analysis

      Public
      Analyses objects following manual segmentation (e.g. EM)
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Apr 19, 2018Apr 19, 2018

    • shell-misc

      Public
      Shell
      •1•0•0•0•Updated Mar 13, 2018Mar 13, 2018