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Allow multiple unrelated cases/families in samplesheet.csv #604

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sitems opened this issue Aug 22, 2024 · 1 comment
Open

Allow multiple unrelated cases/families in samplesheet.csv #604

sitems opened this issue Aug 22, 2024 · 1 comment
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enhancement Improvement for existing functionality

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@sitems
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sitems commented Aug 22, 2024

Description of feature

I have data consisting of several unrelated trios and several individuals. Is it possible to run the pipeline with just one samplesheet (where cases have different case_id)? So, for example, each case/family would have separate output snv.vcf.gz.

@sitems sitems added the enhancement Improvement for existing functionality label Aug 22, 2024
@ramprasadn
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Currently, the pipeline does not support samplesheets that include unrelated individuals @sitems. We have several features in our backlog that we're working to complete. Once we finish those, we will certainly take a closer look at this issue.

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