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new subworkflow: fastq_align_parabricks #6894

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famosab opened this issue Oct 29, 2024 · 1 comment · May be fixed by #6876
Open
4 tasks done

new subworkflow: fastq_align_parabricks #6894

famosab opened this issue Oct 29, 2024 · 1 comment · May be fixed by #6876
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@famosab
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famosab commented Oct 29, 2024

Is there an existing subworkflow for this?

  • I have searched for the existing subworkflow

Is there an open PR for this?

  • I have searched for existing PRs

Is there an open issue for this?

  • I have searched for existing issues

Are you going to work on this?

  • If I'm planning to work on this subworkflow, I added myself to the Assignees to facilitate tracking who is working on the subworkflow
@famosab
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famosab commented Oct 29, 2024

We need to finish
#6860
#6861

The nf-test config (tests/config/nf-test.config) needs to include

docker.runOptions = '-u $(id -u):$(id -g) --gpus device=0'

@famosab famosab linked a pull request Oct 29, 2024 that will close this issue
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