From d0633c6f5944009cb0f4409de6ddd0d55154d257 Mon Sep 17 00:00:00 2001 From: Fernando Duarte Date: Fri, 11 Oct 2024 11:29:35 +0000 Subject: [PATCH 1/2] Increased ucl myriad pull time out --- conf/ucl_myriad.config | 1 + 1 file changed, 1 insertion(+) diff --git a/conf/ucl_myriad.config b/conf/ucl_myriad.config index 0c988623..1feaa339 100644 --- a/conf/ucl_myriad.config +++ b/conf/ucl_myriad.config @@ -21,4 +21,5 @@ singularity { enabled = true autoMounts = true cacheDir = "${HOME}/Scratch/.apptainer/pull" + pullTimeout = "3 hours" } From 4c41f452778ca30a52b99b0af904b4e4e128b14c Mon Sep 17 00:00:00 2001 From: Fernando Duarte Date: Fri, 11 Oct 2024 16:31:30 +0000 Subject: [PATCH 2/2] Changed work directory to $HOME/Scratch --- conf/ucl_myriad.config | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/conf/ucl_myriad.config b/conf/ucl_myriad.config index 1feaa339..52243b23 100644 --- a/conf/ucl_myriad.config +++ b/conf/ucl_myriad.config @@ -1,9 +1,11 @@ params { config_profile_description = 'University College London Myriad cluster' - config_profile_contact = 'Chris Wyatt (ucbtcdr@ucl.ac.uk)' + config_profile_contact = 'Chris Wyatt (ucbtcdr@ucl.ac.uk), Fernando Duarte (ucbtfrd@ucl.ac.uk)' config_profile_url = 'https://www.rc.ucl.ac.uk/docs/Clusters/Myriad/' } +workDir = "${HOME}/Scratch/work" + executor { name = 'sge' }