To use the DaiSyBio profile, run a nf-core pipeline with -profile daisybio,<singularity/apptainer>
.
This will automatically download and apply 'daisybio.config' as a nextflow config file.
The config file will set slurm as a scheduler for the compute cluster, define max resources, and specify cache locations for singularity, apptainer, and iGenomes. Pipeline-specific parameters still need to be configured manually.
Work directories will be kept at /nfs/scratch/nf-core_work/
in a directory named after the full path of the launch directory ("." separated). Thy are automatically removed after a successful pipeline run. To keep the intermediate file, e.g. for using the -resume
function, add keep_work
as a profile: -profile daisybio,<singularity/apptainer>,keep_work
.