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Add, standardize and document DART outputs #15

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oliche opened this issue Jul 3, 2023 · 1 comment
Open

Add, standardize and document DART outputs #15

oliche opened this issue Jul 3, 2023 · 1 comment
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@oliche
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oliche commented Jul 3, 2023

Spike sorter have sloppy, non-complete and non-documented output formats.
Transformation to SI units is lost, some useful datasets are omitted and quality control non-existent.
Here it is the opportunity to write down the outputs of this spike sorter and specify some qc metrics along the way.

  • preprocessing: ap rms, spectrogram, bad channels, raw data snapshots (raw / destripe / residuals)
  • localisation hdf5 or parquet dataframe
  • drift: vertical shifts array, snapshots
  • spike sorting: spike trains as usual, sample waveforms, templates

Note 6/29: HDF5 files in particular can have some issues with parallel processing e.g. https://stackoverflow.com/questions/68457924/error-while-accessing-hdf5-file-shows-error-oserror-unable-to-open-file

@oliche
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oliche commented Jul 3, 2023

For now this is applicable only to drift and pre-processing

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