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Add references for algorithms in docstring #330

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kaizu opened this issue Dec 17, 2018 · 3 comments
Open

Add references for algorithms in docstring #330

kaizu opened this issue Dec 17, 2018 · 3 comments
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kaizu commented Dec 17, 2018

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@kaizu kaizu transferred this issue from ecell/ecell4_base Feb 15, 2019
@kaizu kaizu transferred this issue from ecell/ecell4 Feb 15, 2019
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kaizu commented Jun 27, 2019 •
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  • ode

Ordinary Differential Equations. "Explicit Euler", "Cash-Karp", or "Controlled Rosenbrock 4". See Boost.Numeric.Odeint
https://www.boost.org/doc/libs/release/libs/numeric/odeint/

  • gillespie

The Gillespie algorithm. The direct method.
https://doi.org/10.1021/j100540a008

  • meso

The spatial Gillespie algorithm. The mesoscopic cubic-lattice-based algorithm. The next subvolume method.

  • bd

The Reaction Brownian Dynamics (RBD) method.

  • spatiocyte

The microscopic HCP-lattice-based algorithm. The Spatiocyte algorithm.

  • egfrd, sgfrd

The enhanced Green's Function Reaction Dynamics (eGFRD) method.

@kaizu kaizu self-assigned this Jun 27, 2019
@kaizu kaizu added the document label Jun 27, 2019
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kaizu commented Apr 29, 2020

Moved to ecell/ecell4_docs#23

@kaizu kaizu closed this as completed Apr 29, 2020
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kaizu commented Apr 29, 2020

This issue requests to update docstring. Reopen.

@kaizu kaizu reopened this Apr 29, 2020
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