v2.1.6

brainglobe-atlasapi replaces bg-atlasapi

bg-atlasapi has been renamed, and thus we now depend on the new brainglobe-atlasapi package.

Other minor developer tool updates are included in this update.

What's Changed

• User-specified colormap in PointsDensity by @GuillaumeLeGoc in #325
• Use the updated upload_pypi action by @IgorTatarnikov in #326
• Add check manifest to ci by @willGraham01 in #329
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #328
• Create CITATION.cff by @willGraham01 in #324
• update to latest vedo release by @alessandrofelder in #331
• bg-atlasapi to brainglobe-atlasapi by @willGraham01 in #332

New Contributors

• @GuillaumeLeGoc made their first contribution in #325

Full Changelog: v2.1.5...v2.1.6

v2.1.5

Bump to brainglobe-space dependency

Bumps the bg-space dependency to its replacement: brainglobe-space.

What's Changed

• Add simple web export example by @adamltyson in #319
• Add explicit brainglobe-space dependency by @willGraham01 in #320

New Contributors

• @willGraham01 made their first contribution in #320

Full Changelog: v2.1.4...v2.1.5

v2.1.4

What's Changed

• Remove GUI by @adamltyson in #307
• Save animation example to cwd by @adamltyson in #308
• Update message warning about lack of allensdk by @adamltyson in #309
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #310
• Update example notebook by @adamltyson in #311
• Update notebook example by @adamltyson in #312
• example to show probe tracks by @jingjie-li in #313
• Update readme images to use full URL by @adamltyson in #317
• Fix rotation bug when exproting to html by @IgorTatarnikov in #318

New Contributors

• @jingjie-li made their first contribution in #313

Full Changelog: v2.1.3...v2.1.4

v2.1.3

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #300
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #303
• Update pre-commit monthly by @adamltyson in #301
• fix some vedo function calls still using lowerCamelCase instead of snake_case by @carlocastoldi in #304
• Simplify repo structure by @adamltyson in #306

Full Changelog: v2.1.2...v2.1.3

v2.1.2

What's Changed

• Unpinned h5py version by @IgorTatarnikov in #299

Full Changelog: v2.1.1...v2.1.2

v2.1.1

What's Changed

• various (small) improvements by @marcomusy in #291
• Fixed bug related to issue #293, amended tests to check in the future by @IgorTatarnikov in #296
• Update test badge by @alessandrofelder in #298
• deep copy the volume transform by @alessandrofelder in #297

Full Changelog: v2.1.0...v2.1.1

v2.1.0

What's Changed

• Revisions by @FedeClaudi in #147
• Revisions by @FedeClaudi in #148
• Update getting_started.ipynb by @seblammers in #163
• Dev2 by @FedeClaudi in #167
• fix label and label's dot position by @RobertoDF in #177
• bug fix remove region in gui by @RobertoDF in #184
• fix for pointdensity by @FedeClaudi in #182
• Hetamap visualization by @FedeClaudi in #186
• Solve transparency bug in linux by @RobertoDF in #185
• Docstring changes and some suggestions by @seankmartin in #191
• Points density by @FedeClaudi in #194
• Vtk9 by @FedeClaudi in #195
• Add invert param to slice method of Scene by @RobertoDF in #201
• invert parameter missing by @RobertoDF in #211
• Add link to contributing guide by @adamltyson in #212
• Changed 'lexer_name' param to 'lexer' for rich update by @rcpeene in #223
• Update links in readme by @adamltyson in #232
• fix: retrieving meshes for a region present in the onthology but absent in the annotation atlas by @carlocastoldi in #246
• Add notice about lack of support by @adamltyson in #248
• minor installation/test running fixing by @alessandrofelder in #254
• pass DISPLAY env var to tox by @alessandrofelder in #260
• Potential fix for test_ruler_from_surface, removed transformation by @IgorTatarnikov in #262
• Fix windows install by @alessandrofelder in #263
• Install HDF5 for mac CI by @alessandrofelder in #265
• Standardise issue templates by @adamltyson in #267
• use pyvista action for headless display in tox by @alessandrofelder in #273
• Fix test_export_html and run it on CI by @alessandrofelder in #275
• Compatibility with vedo 2023.5.0 by @IgorTatarnikov in #277
• Fix video test by @alessandrofelder in #276
• All examples rendering correctly with vedo 2023.5.0 by @IgorTatarnikov in #281
• Remove setting of user-dependent FXAA vedo setting by @alessandrofelder in #283
• Tiny improvement to contributing guide by @alessandrofelder in #284
• Switch PySide2 for PyQt5 by @IgorTatarnikov in #287
• Mega fix of brainrender by @alessandrofelder in #250

New Contributors

• @seblammers made their first contribution in #163
• @RobertoDF made their first contribution in #177
• @seankmartin made their first contribution in #191
• @rcpeene made their first contribution in #223
• @carlocastoldi made their first contribution in #246
• @alessandrofelder made their first contribution in #254
• @IgorTatarnikov made their first contribution in #262

Full Changelog: v2.0.0.0...v2.1.0

v2.0.0.0

Major changes, check the docs for details: https://docs.brainrender.info/usage/overview/v1-greater-than-v2

v1.1.0.0

New:

• added a new Actor class which makes it easier to manage how Render transforms actors at render time. Actor also create's labels and can be printed to get more details about a specific mehs
• exposed scale for screenshots (thanks @vigji )

Bug fixes:

• multiple calls to render now transform neurons correctly
• scene.add_brain_regions now returns colored brain regions when only an hemisphere's mesh is requested

Released v1.0.1.0

change log

• Fish neurons API
• compatible with python 3.7
• allensdk optional
• new axes look
• fixed axes origin

small stuff

• improved camera stuff
• new scene special attributes
• scene.list_actors