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Add support for single labeled instance model #6

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bruno-f-cruz opened this issue Sep 16, 2022 · 0 comments
Open

Add support for single labeled instance model #6

bruno-f-cruz opened this issue Sep 16, 2022 · 0 comments

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@bruno-f-cruz
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Following Sleap structure, there are currently four model types supported in Bonsai:

- Multi-instance:

  • centroid
  • top-down-model (Centroid + CenteredInstance)
  • top-down-id-model (Centroid + CenteredInstance + ClassID)

- Single Instance:

  • single instance (CenteredInstance)

Since Bonsai affords the ability to create custom centroid and instance cropping image processing routines, it would be nice to have the ability to run identification and pose estimation without the first centroid tracking step. This would be implemented through a custom single labeled instance network model. Similarly to the current single instance, it would be great if this first model always guarantees a single output per input image (even if full of NaNs).

As a side note, while certainly not necessary, is it possible to have a model wherein, from a cropped image, outputs only ClassID?

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