styloid-r8

• Improve the user experience with Ellipsoid Factor
• Bug fixes and performance improvements to Particle Analyser
• Update to use scijava 29.2.1 and the versions of dependencies that it specifies

styloid-r7

Fixes bugs in Particle Analyser and Purify that resulted from lack of explicit handling of background

styloid-r6

• Fixes a bug in the Analyse Skeleton wrapper that caused some detailed output on branch lengths to be uncalibrated (#256 )
• Update URLs to use HTTPS
• Remove stale URLs in Javadoc
• Tidy up URLs e.g. dx.doi.org -> doi.org

styloid-r5

• code tidy-up
• better handling of dimensions in some Modern plugins
• more tests
• finer-grained version reporting for usage analytics

styloid-r4

• Particle Analyser: Feret maximum points' coordinates added to Results table and 3D display
• Fixes a bug that prevented Ellipsoid Factor from being recorded by the Macro Recorder

styloid-r3

• Adds the option to have detailed eigenvector elements included in the Results table for Moments of Inertia

styloid-r2

• Speed improvements to Particle Analyser's particle labelling step

Java's inbuild HashSet<Integer> was used heavily to record collisions between partial labels, and has been replaced by the faster and more memory-efficient IntHashSet from Eclipse Collections. In testing it results in about 20% overall speedup to particle labelling.

styloid-r1

• Adds a progress bar to Ellipsoid Factor
• Code style improvements
• Additional tests for Anisotropy

styloid

First user ready release of BoneJ2

Fixes numerous performance and algorithmic problems found during the -experimental phase.

• Ellipsoid Factor samples ellipsoids more randomly, ensuring that smaller features are better fitted
• Anisotropy uses every pixel in the volume and uses equal probe length in all directions
• Particle Analyser is much faster and adds branch length measurement
• Moments is more multithreaded and faster

Improve and fix ParticleCounter

Fixes #170
Additional option to colour particles by orientation