ci.yml

name: CI

concurrency:
  group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
  cancel-in-progress: true

on: [push, pull_request]

permissions:
  contents: read

jobs:

  sdist:
    name: Create sdist
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
          submodules: true
      - uses: actions/setup-python@v5
        name: Install Python
        with:
          python-version: 3.x
      - name: Ubuntu library headers
        run:  |
          sudo apt update
          # Keep in sync with "Prerequisites" in User's Guide.
          sudo apt install libblosc-dev libbz2-dev libhdf5-dev liblz4-dev liblzo2-dev libsnappy-dev libzstd-dev zlib1g-dev
      - name: Source distribution
        run: |
          pip install build
          python -m build --sdist
      - name: Save source distribution
        uses: actions/upload-artifact@v4
        with:
          name: tables-sdist
          path: dist/*.tar.gz


  lint:
    name: Lint
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.x"

      - name: Install lint dependencies
        shell: bash
        run: |
          python -m pip install --upgrade pip
          python -m pip install flake8
          if [ -f requirements-lint.txt ]; then pip install -r requirements-lint.txt; fi

      - name: Lint (flake8)
        run: |
          python -m flake8 --count --show-source --statistics tables


  build:
    name: ${{ matrix.os }} ${{ matrix.python }} ${{ matrix.numpy }} ${{ matrix.name }}
    runs-on: ${{ matrix.os }}
    needs: sdist
    defaults:
      run:
        shell: bash -l {0}
    strategy:
      fail-fast: false
      matrix:
        # macos-13 is Intel, macos-latest is Apple Silicon
        os: [ubuntu-latest, macos-13, macos-latest, windows-latest]
        # Keep in sync with ``project.classifiers`` in ``pyproject.toml``.
        python: ['3.11', '3.12', '3.13']
        numpy: ['numpy']
        include:
          - os: ubuntu-latest
            python: '3.12'
            numpy: 'numpy>=2.2.dev0'
          - os: ubuntu-latest
            python: '3.12'
            numpy: 'numpy<2'

    steps:
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0
        submodules: true
    - name: Set up Python ${{ matrix.python }}
      uses: conda-incubator/setup-miniconda@v3
      with:
        python-version: ${{ matrix.python }}
        auto-update-conda: true
        channels: conda-forge
        channel-priority: strict
    - name: Install compilers
      if: runner.os != 'Linux'
      run: |
        conda install c-compiler cxx-compiler
    - name: Install dependencies
      run: |
        # Keep in sync with
        # "Prerequisites" in User's Guide,
        # ``build-system.requires`` in ``pyproject.toml``.
        conda install -q bzip2 hdf5 lzo zlib pip
        python -m pip install --require-hashes -r requirements.txt
        python -m pip install --extra-index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple '${{ matrix.numpy }}'
    - name: Get source distribution
      uses: actions/download-artifact@v4
      with:
        name: tables-sdist
    - name: Installation
      run: |
        python -m pip install -v tables-*.tar.gz
    - name: 'Run test'
      run: |
        cd .. && python -m tables.tests.test_all -v
        pt2to3 -h
        ptrepack -h
        ptdump -h
        pttree -h


  build_cblosc:
    name: Sdist with cblosc2
    runs-on: ubuntu-latest
    needs: sdist
    defaults:
      run:
        shell: bash -l {0}

    steps:
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0
        submodules: true
    - name: Set up Python
      uses: conda-incubator/setup-miniconda@v3
      with:
        auto-update-conda: true
        channels: conda-forge
        channel-priority: strict
    - name: Install compilers
      if: runner.os != 'Linux'
      run: |
        conda install c-compiler cxx-compiler
    - name: Install dependencies
      run: |
        # Keep in sync with "Prerequisites" in User's Guide,
        # ``build-system.requires`` in ``pyproject.toml``.
        conda install bzip2 hdf5 lzo zlib blosc c-blosc2 pip setuptools wheel packaging py-cpuinfo "numpy>=2" cython numexpr 'typing_extensions>=4.4.0'
    - name: Get source distrubtion
      uses: actions/download-artifact@v4
      with:
        name: tables-sdist
    - name: Installation
      run: |
        python -m pip install -v tables-*.tar.gz --no-deps
    - name: Python blosc2 wheel or conda pkg is not installed
      run: |
        ! conda list | grep -E '^(python-)?blosc2'
    - name: 'Run test'
      run: |
        cd .. && python -m tables.tests.test_all -v
        pt2to3 -h
        ptrepack -h
        ptdump -h
        pttree -h