paper.bib

@article{Azzam:78,
author = {R. M. A. Azzam},
journal = {Opt. Lett.},
keywords = {Fourier transforms; Mueller matrices; Optical activity; Optical elements; Optical systems; Polarimetry},
number = {6},
pages = {148--150},
publisher = {Optica Publishing Group},
title = {Photopolarimetric measurement of the Mueller matrix by Fourier analysis of a single detected signal},
volume = {2},
month = {Jun},
year = {1978},
url = {https://opg.optica.org/ol/abstract.cfm?URI=ol-2-6-148},
doi = {10.1364/OL.2.000148},
abstract = {All 16 elements of the Mueller matrix of an optical system (sample) can be encoded onto, hence can be retrieved from, a single detected signal using a class of photopolarimeters with modulated polarizing and analyzing optics. The general theory of operation of such polarimeters is presented. We also propose a specific new photopolarimeter whose polarizing and analyzing optics are modulated by synchronously rotating two quarter-wave retarders at angular speeds $\omega$ and 5$\omega$. When the light flux leaving such polarimeter is linearly detected, a periodic signal J$=$a0$+$∑n$=$112(an cos n$\omega$ft$+$bn sin n$\omega$ft) is generated, with fundamental frequency $\omega$f $=$ 2$\omega$. From the Fourier amplitudes a0, an, bn, to be measured by performing a discrete Fourier transform (DFT) of the signal ℐ, the 16 elements of the Mueller matrix are simply determined.},
}

@article{Smith:02,
author = {Matthew H. Smith},
journal = {Appl. Opt.},
keywords = {Polarimetry; Polarization-selective devices; Fiber optic components; Mueller matrices; Optical elements; Photoelasticity; Polarization; Polarizers},
number = {13},
pages = {2488--2493},
publisher = {Optica Publishing Group},
title = {Optimization of a dual-rotating-retarder Mueller matrix polarimeter},
volume = {41},
month = {May},
year = {2002},
url = {https://opg.optica.org/ao/abstract.cfm?URI=ao-41-13-2488},
doi = {10.1364/AO.41.002488},
abstract = {The dual-rotating-retarder configuration is one of the most common forms of the Mueller matrix polarimeter. I perform an optimization of this polarimeter configuration by minimizing the condition number of the system data reduction matrix. I find the optimum retardance for the rotating retarders to be 127{\textdegree}. If exactly 16 intensity measurements are used for a Mueller matrix calculation, a complex relationship exists between the condition number and the sizes of the angular increments of the two retarders. If many intensity measurements are made, thus overspecifying the calculation, I find broad optimal ranges of angular increments of the two retarders that yield essentially equal performance. Experimental results are given.},
}

@book{CLY,
  title     = "Polarized Light and Optical Systems",
  author    = "Chipman, Russell A and Lam, Wai-Sze Tiffany and Young, Garam.",
  year      = 2018,
  publisher = "CRC Press",
}

@article{anche2023polarization,
  title={Polarization aberrations in next-generation giant segmented mirror telescopes (GSMTs)-I. Effect on the coronagraphic performance},
  author={Anche, Ramya M and Ashcraft, Jaren N and Haffert, Sebastiaan Y and Millar-Blanchaer, Maxwell A and Douglas, Ewan S and Snik, Frans and Williams, Grant and van Holstein, Rob G and Doelman, David and Van Gorkom, Kyle and others},
  journal={Astronomy \& Astrophysics},
  volume={672},
  pages={A121},
  year={2023},
  publisher={EDP Sciences},
  doi={	https://doi.org/10.1051/0004-6361/202245651}
}

@misc{gaudi2020habitable,
      title={The Habitable Exoplanet Observatory (HabEx) Mission Concept Study Final Report}, 
      author={B. Scott Gaudi and Sara Seager and Bertrand Mennesson and Alina Kiessling and Keith Warfield and Kerri Cahoy and John T. Clarke and Shawn Domagal-Goldman and Lee Feinberg and Olivier Guyon and Jeremy Kasdin and Dimitri Mawet and Peter Plavchan and Tyler Robinson and Leslie Rogers and Paul Scowen and Rachel Somerville and Karl Stapelfeldt and Christopher Stark and Daniel Stern and Margaret Turnbull and Rashied Amini and Gary Kuan and Stefan Martin and Rhonda Morgan and David Redding and H. Philip Stahl and Ryan Webb and Oscar Alvarez-Salazar and William L. Arnold and Manan Arya and Bala Balasubramanian and Mike Baysinger and Ray Bell and Chris Below and Jonathan Benson and Lindsey Blais and Jeff Booth and Robert Bourgeois and Case Bradford and Alden Brewer and Thomas Brooks and Eric Cady and Mary Caldwell and Rob Calvet and Steven Carr and Derek Chan and Velibor Cormarkovic and Keith Coste and Charlie Cox and Rolf Danner and Jacqueline Davis and Larry Dewell and Lisa Dorsett and Daniel Dunn and Matthew East and Michael Effinger and Ron Eng and Greg Freebury and Jay Garcia and Jonathan Gaskin and Suzan Greene and John Hennessy and Evan Hilgemann and Brad Hood and Wolfgang Holota and Scott Howe and Pei Huang and Tony Hull and Ron Hunt and Kevin Hurd and Sandra Johnson and Andrew Kissil and Brent Knight and Daniel Kolenz and Oliver Kraus and John Krist and Mary Li and Doug Lisman and Milan Mandic and John Mann and Luis Marchen and Colleen Marrese-Reading and Jonathan McCready and Jim McGown and Jessica Missun and Andrew Miyaguchi and Bradley Moore and Bijan Nemati and Shouleh Nikzad and Joel Nissen and Megan Novicki and Todd Perrine and Claudia Pineda and Otto Polanco and Dustin Putnam and Atif Qureshi and Michael Richards and A. J. Eldorado Riggs and Michael Rodgers and Mike Rud and Navtej Saini and Dan Scalisi and Dan Scharf and Kevin Schulz and Gene Serabyn and Norbert Sigrist and Glory Sikkia and Andrew Singleton and Stuart Shaklan and Scott Smith and Bart Southerd and Mark Stahl and John Steeves and Brian Sturges and Chris Sullivan and Hao Tang and Neil Taras and Jonathan Tesch and Melissa Therrell and Howard Tseng and Marty Valente and David Van Buren and Juan Villalvazo and Steve Warwick and David Webb and Thomas Westerhoff and Rush Wofford and Gordon Wu and Jahning Woo and Milana Wood and John Ziemer and Giada Arney and Jay Anderson and Jesús Maíz-Apellániz and James Bartlett and Ruslan Belikov and Eduardo Bendek and Brad Cenko and Ewan Douglas and Shannon Dulz and Chris Evans and Virginie Faramaz and Y. Katherina Feng and Harry Ferguson and Kate Follette and Saavik Ford and Miriam García and Marla Geha and Dawn Gelino and Ylva Götberg and Sergi Hildebrandt and Renyu Hu and Knud Jahnke and Grant Kennedy and Laura Kreidberg and Andrea Isella and Eric Lopez and Franck Marchis and Lucas Macri and Mark Marley and William Matzko and Johan Mazoyer and Stephan McCandliss and Tiffany Meshkat and Christoph Mordasini and Patrick Morris and Eric Nielsen and Patrick Newman and Erik Petigura and Marc Postman and Amy Reines and Aki Roberge and Ian Roederer and Garreth Ruane and Edouard Schwieterman and Dan Sirbu and Christopher Spalding and Harry Teplitz and Jason Tumlinson and Neal Turner and Jessica Werk and Aida Wofford and Mark Wyatt and Amber Young and Rob Zellem},
      year={2020},
      eprint={2001.06683},
      archivePrefix={arXiv},
      primaryClass={astro-ph.IM},
      doi={https://doi.org/10.48550/arXiv.2001.06683}
}

@inproceedings{Will_polarization_luvoir,
author = {Scott D. Will and James R. Fienup},
title = {{Effects and mitigation of polarization aberrations in LUVOIR coronagraph}},
volume = {11117},
booktitle = {Techniques and Instrumentation for Detection of Exoplanets IX},
editor = {Stuart B. Shaklan},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {1111710},
keywords = {LUVOIR, polarization aberrations, wavefront control, APLC, VVC, end-to-end modeling, wavefront sensing},
year = {2019},
doi = {10.1117/12.2525377},
URL = {https://doi.org/10.1117/12.2525377}
}

@article{Lu:96,
author = {Shih-Yau Lu and Russell A. Chipman},
journal = {J. Opt. Soc. Am. A},
keywords = {Depolarization; Mueller matrices; Phase; Polarization; Polarizers; Transmittance},
number = {5},
pages = {1106--1113},
publisher = {Optica Publishing Group},
title = {Interpretation of Mueller matrices based on polar decomposition},
volume = {13},
month = {May},
year = {1996},
url = {https://opg.optica.org/josaa/abstract.cfm?URI=josaa-13-5-1106},
doi = {10.1364/JOSAA.13.001106},
abstract = {We present an algorithm that decomposes a Mueller matrix into a sequence of three matrix factors: a diattenuator, followed by a retarder, then followed by a depolarizer. Those factors are unique except for singular Mueller matrices. Based on this decomposition, the diattenuation and the retardance of a Mueller matrix can be defined and computed. Thus this algorithm is useful for performing data reduction upon experimentally determined Mueller matrices.},
}

@Article{         harris2020array,
 title         = {Array programming with {NumPy}},
 author        = {Charles R. Harris and K. Jarrod Millman and St{\'{e}}fan J.
                 van der Walt and Ralf Gommers and Pauli Virtanen and David
                 Cournapeau and Eric Wieser and Julian Taylor and Sebastian
                 Berg and Nathaniel J. Smith and Robert Kern and Matti Picus
                 and Stephan Hoyer and Marten H. van Kerkwijk and Matthew
                 Brett and Allan Haldane and Jaime Fern{\'{a}}ndez del
                 R{\'{i}}o and Mark Wiebe and Pearu Peterson and Pierre
                 G{\'{e}}rard-Marchant and Kevin Sheppard and Tyler Reddy and
                 Warren Weckesser and Hameer Abbasi and Christoph Gohlke and
                 Travis E. Oliphant},
 year          = {2020},
 month         = sep,
 journal       = {Nature},
 volume        = {585},
 number        = {7825},
 pages         = {357--362},
 doi           = {10.1038/s41586-020-2649-2},
 publisher     = {Springer Science and Business Media {LLC}},
 url           = {https://doi.org/10.1038/s41586-020-2649-2}
}

@ARTICLE{2020SciPy-NMeth,
  author  = {Virtanen, Pauli and Gommers, Ralf and Oliphant, Travis E. and
            Haberland, Matt and Reddy, Tyler and Cournapeau, David and
            Burovski, Evgeni and Peterson, Pearu and Weckesser, Warren and
            Bright, Jonathan and {van der Walt}, St{\'e}fan J. and
            Brett, Matthew and Wilson, Joshua and Millman, K. Jarrod and
            Mayorov, Nikolay and Nelson, Andrew R. J. and Jones, Eric and
            Kern, Robert and Larson, Eric and Carey, C J and
            Polat, {\.I}lhan and Feng, Yu and Moore, Eric W. and
            {VanderPlas}, Jake and Laxalde, Denis and Perktold, Josef and
            Cimrman, Robert and Henriksen, Ian and Quintero, E. A. and
            Harris, Charles R. and Archibald, Anne M. and
            Ribeiro, Ant{\^o}nio H. and Pedregosa, Fabian and
            {van Mulbregt}, Paul and {SciPy 1.0 Contributors}},
  title   = {{{SciPy} 1.0: Fundamental Algorithms for Scientific
            Computing in Python}},
  journal = {Nature Methods},
  year    = {2020},
  volume  = {17},
  pages   = {261--272},
  adsurl  = {https://rdcu.be/b08Wh},
  doi     = {10.1038/s41592-019-0686-2},
}

@inproceedings{Ashcraft_2023,
author = {Jaren N. Ashcraft and Ewan S. Douglas and Daewook Kim and A. J. E. Riggs and Ramya Anche and Trent Brendel and Kevin Derby and Brandon D. Dube and Quinn Jarecki and Emory Jenkins and Kian S. Milani},
title = {{Poke: an open-source, ray-based physical optics platform}},
volume = {12664},
booktitle = {Optical Modeling and Performance Predictions XIII},
editor = {Mark A. Kahan},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {1266404},
keywords = {open-source, python, ray tracing, diffraction, polarization ray tracing, thin-film stacks, gaussian beamlet decomposition, simulation},
year = {2023},
doi = {10.1117/12.2678001},
URL = {https://doi.org/10.1117/12.2678001}
}

@article{Dube2019, doi = {10.21105/joss.01352}, url = {https://doi.org/10.21105/joss.01352}, year = {2019}, publisher = {The Open Journal}, volume = {4}, number = {37}, pages = {1352}, author = {Brandon Dube}, title = {prysm: A Python optics module}, journal = {Journal of Open Source Software} }

@article{Dube:22,
author = {Brandon D. Dube and A. J. Riggs and Brian D. Kern and Eric J. Cady and John E. Krist and Hanying Zhou and Bijan Nemati and Byoung-Joon Seo and John Steeves and David Arndt and Milan Mandi\'{c} and Joel Shields and Dhemetrios Boussalis and Alfredo Valverde and Zahidul Rahman and Nanaz Fathpour},
journal = {J. Opt. Soc. Am. A},
keywords = {Deformable mirrors; Optical elements; Optical systems; Phase contrast; Space telescopes; Wave front sensing},
number = {12},
pages = {C133--C142},
publisher = {Optica Publishing Group},
title = {Exascale integrated modeling of low-order wavefront sensing and control for the Roman Coronagraph instrument},
volume = {39},
month = {Dec},
year = {2022},
url = {https://opg.optica.org/josaa/abstract.cfm?URI=josaa-39-12-C133},
doi = {10.1364/JOSAA.472364},
abstract = {Astronomical instruments to detect exoplanets require extreme wavefront stability. For these missions to succeed, comprehensive and precise modeling is required to design and analyze suitable coronagraphs and their wavefront control systems. In this paper, we describe techniques for integrated modeling at scale that is, to the best of our knowledge, 1000 times faster than previously published works. We show how this capability has been used to validate performance and perform uncertainty quantification for the Roman Coronagraph instrument. Finally, we show how this modeling capacity may be necessary to design and build the next generation of space-based coronagraph instruments.},
}

@inproceedings{cupy_learningsys2017,
  author       = "Okuta, Ryosuke and Unno, Yuya and Nishino, Daisuke and Hido, Shohei and Loomis, Crissman",
  title        = "CuPy: A NumPy-Compatible Library for NVIDIA GPU Calculations",
  booktitle    = "Proceedings of Workshop on Machine Learning Systems (LearningSys) in The Thirty-first Annual Conference on Neural Information Processing Systems (NIPS)",
  year         = "2017",
  url          = "http://learningsys.org/nips17/assets/papers/paper_16.pdf"
}

@misc{pypol,
  author       = {Scott Prahl},
  howpublished = {\url{https://github.com/scottprahl/pypolar}},
  title        = {Pypolar},
  year         = {2024},
  doi          = {10.5281/zenodo.8358112}
}

@misc{key,
  author       = {},
  howpublished = {},
  title        = {},
  year         = {}
}

@misc{ashcraft2024,
      title={The space coronagraph optical bench (SCoOB): 3. Mueller matrix polarimetry of a coronagraphic exit pupil}, 
      author={Jaren N. Ashcraft and Ewan S. Douglas and Ramya M. Anche and Kyle Van Gorkom and Emory Jenkins and William Melby and Maxwell A. Millar-Blanchaer},
      year={2024},
      eprint={2406.19616},
      archivePrefix={arXiv},
      primaryClass={astro-ph.IM},
      url={https://arxiv.org/abs/2406.19616}, 
      doi={https://doi.org/10.1117/12.3019204}
}

@misc{gromit,
  author       = {Jaren N. Ashcraft and Emory Jenkins and Kyle Van Gorkom},
  howpublished = {\url{https://github.com/uasal/gromit}},
  title        = {Gromit: Repository containing code to use the UASAL dual-rotating-retarder Mueller Polarimeter facility},
  year         = {2024}
}

@article{Pruthvi.2020, doi = {10.21105/joss.02693}, url = {https://doi.org/10.21105/joss.02693}, year = {2020}, publisher = {The Open Journal}, volume = {5}, number = {55}, pages = {2693}, author = {Hemanth Pruthvi.}, title = {PyAstroPol: A Python package for the instrumental polarization analysis of the astronomical optics.}, journal = {Journal of Open Source Software} }

@inproceedings{melby2024,
author = {William Melby and Manxuan Zhang and Maxwell Millar-Blanchaer and Anthony D. Manni and Douglas S. Hobbs and Jaren Ashcraft},
title = {{Half-wave plate characterizations for the Keck NIRC2 polarimetry mode}},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
keywords = {NIRC2, polarimetric imaging, waveplate},
year = {2023},
doi = {https://doi.org/10.1117/12.3019556}
}

@software{jax2018github,
  author = {James Bradbury and Roy Frostig and Peter Hawkins and Matthew James Johnson and Chris Leary and Dougal Maclaurin and George Necula and Adam Paszke and Jake Vander{P}las and Skye Wanderman-{M}ilne and Qiao Zhang},
  title = {{JAX}: composable transformations of {P}ython+{N}um{P}y programs},
  url = {http://github.com/google/jax},
  version = {0.3.13},
  year = {2018},
}