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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(guess.batch.vars)
export(meffil.add.cell.type.reference)
export(meffil.add.chip)
export(meffil.add.cnv.reference)
export(meffil.add.copynumber450k.references)
export(meffil.add.featureset)
export(meffil.all.features)
export(meffil.autosomal.subset)
export(meffil.basenames)
export(meffil.calculate.cnv)
export(meffil.cell.count.estimates)
export(meffil.cell.count.qc.plots)
export(meffil.cell.type.specific.methylation)
export(meffil.cnv.matrix)
export(meffil.collapse.dups)
export(meffil.control.matrix)
export(meffil.create.qc.object)
export(meffil.create.samplesheet)
export(meffil.design.matrix)
export(meffil.estimate.cell.counts)
export(meffil.estimate.cell.counts.from.betas)
export(meffil.ewas)
export(meffil.ewas.bedgraph)
export(meffil.ewas.covariate.associations)
export(meffil.ewas.cpg.plot)
export(meffil.ewas.manhattan.plot)
export(meffil.ewas.old)
export(meffil.ewas.parameters)
export(meffil.ewas.qq.plot)
export(meffil.ewas.report)
export(meffil.ewas.sample.characteristics)
export(meffil.ewas.summary)
export(meffil.extract.genotypes)
export(meffil.featureset)
export(meffil.gds.apply)
export(meffil.gds.detection.pvalues)
export(meffil.gds.dims)
export(meffil.gds.methylation)
export(meffil.get.autosomal.sites)
export(meffil.get.beta)
export(meffil.get.features)
export(meffil.get.sites)
export(meffil.get.typeii.sites)
export(meffil.get.x.sites)
export(meffil.get.y.sites)
export(meffil.handle.outliers)
export(meffil.list.cell.type.references)
export(meffil.list.chips)
export(meffil.list.cnv.references)
export(meffil.list.featuresets)
export(meffil.load.controls)
export(meffil.load.detection.pvalues)
export(meffil.load.raw.data)
export(meffil.methylation.pcs)
export(meffil.most.variable.cpgs)
export(meffil.normalization.parameters)
export(meffil.normalization.parameters.from.betas)
export(meffil.normalization.report)
export(meffil.normalization.report.from.betas)
export(meffil.normalization.summary)
export(meffil.normalization.summary.from.betas)
export(meffil.normalize.dataset)
export(meffil.normalize.quantiles)
export(meffil.normalize.sample)
export(meffil.normalize.samples)
export(meffil.pcs)
export(meffil.plot.beadnum.cpgs)
export(meffil.plot.beadnum.samples)
export(meffil.plot.cell.counts)
export(meffil.plot.control.batch)
export(meffil.plot.control.scree)
export(meffil.plot.controlmeans)
export(meffil.plot.detectionp.cpgs)
export(meffil.plot.detectionp.samples)
export(meffil.plot.genotypes)
export(meffil.plot.meth.unmeth)
export(meffil.plot.pc.fit)
export(meffil.plot.probe.batch)
export(meffil.plot.probe.batch.from.betas)
export(meffil.plot.sex)
export(meffil.probe.info)
export(meffil.qc)
export(meffil.qc.parameters)
export(meffil.qc.report)
export(meffil.qc.summary)
export(meffil.read.samplesheet)
export(meffil.remove.samples)
export(meffil.save.detection.pvalues)
export(meffil.snp.betas)
export(meffil.snp.concordance)
export(meffil.snp.names)
export(meffil.summarize.relationship)