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Calcium imaging analysis in MATLAB

This repository contains material for the calcium imaging analysis tutorial run by the Mrsic-Flogel lab for the ndergraduate Blockkurs students. The analysis is conducted in MATLAB.

Handout

The handout has been written with LaTeX. Sources are in the handout sub-folder. To get a .pdf for sources:

  • Make sure you have TeX distribution installed on your computer, e.g. TeX Live,
  • Use latexmk -pdf Ca_Imaging_Analysis.tex in the command line, in the handout folder,
  • Get rid of auxiliary file with latexmk -c, in the same folder.

A precompiled version is available at mouse.vision.

Code

  • Exercises code is located in the MATLAB_exercises sub-folder.
  • Solutions are located in the MATLAB_complete sub-folder. It only contains function files that need to be completed.